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In this problem space, you will have access to the following materials: * background information on HIV/AIDS, * the original Markham et al. reference and other primary literature, * viral sequences from each visit of each patient, * patients' CD4 counts at each visit, * phylogenetic trees of the virus sequences from each patient, * a phylogenetic tree of each patient's starting consensus viral sequence, * a published activity using this data from the book Microbes Count!, * and additional materials prepared by other users of the problem space.You can use this data to explore a number of different questions. Here are a few general questions to get you started: * Does the virus evolve the same way in different patients? * Are there any specific mutations that cause rapid immune decline? * What types of natural selection might be influencing HIV evolution? * Is HIV being transmitted between patients after initial infection?
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